PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG024800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 553aa    MW: 60813.6 Da    PI: 4.6194
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG024800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.4e-09263306952
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +  +e+L + F++n  p ++ +e L+k+l+++ +++  WF+N R
  Pavir.1NG024800.2.p 263 PAAVEVLRKSFAENELPPRDVKENLSKELDISFEKIDKWFKNTR 306
                          67799*************************************99 PP
2PHD315.9e-11761150
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD  1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50
                         +C+ C++  s  +++++lC+g Ck+++H kC ++ le++  p +   wlC+ C +
  Pavir.1NG024800.2.p  7 MCSRCKSheSFPSNKIILCEGaCKRAYHEKCSEPALEKNAPPTSslGWLCKFCLC 61
                         5999**965555*******966***************99999999********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500169.846562IPR019787Zinc finger, PHD-finger
SuperFamilySSF579034.73E-11565IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.9E-10562IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF006282.0E-8761IPR019787Zinc finger, PHD-finger
SMARTSM002494.7E-7760IPR001965Zinc finger, PHD-type
PROSITE patternPS013590859IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466891.63E-9248314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-10249306IPR009057Homeodomain-like
PROSITE profilePS5007111.693252312IPR001356Homeobox domain
SMARTSM003891.3E-8252316IPR001356Homeobox domain
CDDcd000862.22E-9256316No hitNo description
PfamPF000462.6E-6263306IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MEWPKIMCSR CKSHESFPSN KIILCEGACK RAYHEKCSEP ALEKNAPPTS SLGWLCKFCL  60
CKVKILEAIN AHLGTNFTVK CPFEDVFKEA TEQIDSEDAL DEDWLSEYSG DEDYDPEENE  120
ANSSCMSSGE EIMSDDSNGS GSPLYSPNDD IPEFISAEFN SAEGFCHANL DLGIDSSEDD  180
CTQILTYQRP RRDVDYRRLN EEMFGKIIEN EEPSEDEDWG HDRRKKRKTR ARSDGDNSVE  240
GFSNVLSYEK IQKKGRKLFR IPPAAVEVLR KSFAENELPP RDVKENLSKE LDISFEKIDK  300
WFKNTRCAAL RDRKAEGNSH NTAPSKSSRS KGKAGISGKA ERNGHVTATS NNLGTSEEKA  360
GILGKVDSGD NSCFVPLSEI INVPTRLQRN LEKRKMESTS SPVRRACSAT DQVKESMSPT  420
SKSCLWTDLS HPIISEVSAG EQAASQIDSG ACAEEQGAPQ MDTGACAEEQ AASEMYTGAC  480
PEEQAAPLVD VGASDYQPFL DLIDEMCGLE CRLQKLKKNM LSSGAEGCGN GGSDMKNKAV  540
VLVPSAELKE KA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.187990.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG024800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814275.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2T7F1U10.0A0A2T7F1U1_9POAL; Uncharacterized protein
STRINGPavir.J02165.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.23e-54pathogenesis related homeodomain protein A