PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG024800.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 515aa    MW: 58847.3 Da    PI: 8.4684
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG024800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-09453496952
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +  +e+L + F++n  p ++ +e L+k+l+++ +++  WF+N R
  Pavir.1NG024800.4.p 453 PAAVEVLRKSFAENELPPRDVKENLSKELDISFEKIDKWFKNTR 496
                          67799*************************************99 PP
2PHD31.15.3e-11197251150
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                          +C+ C++  s  +++++lC+g Ck+++H kC ++ le++  p +   wlC+ C +
  Pavir.1NG024800.4.p 197 MCSRCKSheSFPSNKIILCEGaCKRAYHEKCSEPALEKNAPPTSslGWLCKFCLC 251
                          5999**965555*******966***************99999999********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.55E-12193255IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.6E-10194252IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.828195252IPR019787Zinc finger, PHD-finger
SMARTSM002494.7E-7197250IPR001965Zinc finger, PHD-type
PfamPF006281.9E-8197251IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590198249IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466891.58E-9438504IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-10439496IPR009057Homeodomain-like
PROSITE profilePS5007111.693442502IPR001356Homeobox domain
SMARTSM003891.8E-8442506IPR001356Homeobox domain
CDDcd000863.23E-8446506No hitNo description
PfamPF000462.4E-6453496IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MHSSENKSVC SNSGRSSKRR KETSSELVPV SNRRSRRNAS HQCKSDSPLK RSPRKVRNAT  60
LAKSITKKYH CSPLKRWKNS DSVAGKTVTG LVARRKKRRK RQNIDETIRL ERRARYFLIK  120
IKLEQNLLDA YSGDGWNGQS REKIKPEKEL QRAKKQIIKC KIAIRDVIRQ LDLYNSTGGV  180
DDPVMPPVAP TNSEHIMCSR CKSHESFPSN KIILCEGACK RAYHEKCSEP ALEKNAPPTS  240
SLGWLCKFCL CKVKILEAIN AHLGTNFTVK CPFEDVFKEA TEQIDSEDAL DEDWLSEYSG  300
DEDYDPEENE ANSSCMSSGE EIMSDDSNGS GSPLYSPNDD IPEFISAEFN SAEGFCHANL  360
DLGIDSSEDD CTQILTYQRP RRDVDYRRLN EEMFGKIIEN EEPSEDEDWG HDRRKKRKTR  420
ARSDGDNSVE GFSNVLSYEK IQKKGRKLFR IPPAAVEVLR KSFAENELPP RDVKENLSKE  480
LDISFEKIDK WFKNTRCAAL RDRKAWIPIS WLFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100RKKRRKR
29599KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG024800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814275.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2T7F1U10.0A0A2T7F1U1_9POAL; Uncharacterized protein
STRINGPavir.J02165.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.29e-87pathogenesis related homeodomain protein A