PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG024800.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 428aa    MW: 46681.8 Da    PI: 4.775
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG024800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.2e-09138181952
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +  +e+L + F++n  p ++ +e L+k+l+++ +++  WF+N R
  Pavir.1NG024800.5.p 138 PAAVEVLRKSFAENELPPRDVKENLSKELDISFEKIDKWFKNTR 181
                          67799*************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-9123189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-10124181IPR009057Homeodomain-like
SMARTSM003891.3E-8127191IPR001356Homeobox domain
PROSITE profilePS5007111.693127187IPR001356Homeobox domain
CDDcd000861.39E-9131191No hitNo description
PfamPF000461.8E-6138181IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSSGEEIMSD DSNGSGSPLY SPNDDIPEFI SAEFNSAEGF CHANLDLGID SSEDDCTQIL  60
TYQRPRRDVD YRRLNEEMFG KIIENEEPSE DEDWGHDRRK KRKTRARSDG DNSVEGFSNV  120
LSYEKIQKKG RKLFRIPPAA VEVLRKSFAE NELPPRDVKE NLSKELDISF EKIDKWFKNT  180
RCAALRDRKA EGNSHNTAPS KSSRSKGKAG ISGKAERNGH VTATSNNLGT SEEKAGILGK  240
VDSGDNSCFV PLSEIINVPT RLQRNLEKRK MESTSSPVRR ACSATDQVKE SMSPTSKSCL  300
WTDLSHPIIS EVSAGEQAAS QIDSGACAEE QGAPQMDTGA CAEEQAASEM YTGACPEEQA  360
APLVDVGASD YQPFLDLIDE MCGLECRLQK LKKNMLSSGA EGCGNGGSDM KNKAVVLVPS  420
AELKEKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.187990.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG024800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814275.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2T7F1U10.0A0A2T7F1U1_9POAL; Uncharacterized protein
STRINGPavir.J02165.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.18e-26pathogenesis related homeodomain protein A