PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG030900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 142aa MW: 14490.4 Da PI: 11.0557

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG030900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.5	1e-33	60	135	9	81
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssss 81 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss Pavir.1NG030900.1.p 60 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSS 135 89*******************************************************9999944432222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.009	59	113	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-30	59	136	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MATTRDVSTT AAAMFNVYQP LPAPSTATPR AAAAAAAADG GGAMAVVPAK PVKKEGGGGK 60 DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP 120 AVFVSSSAPS TSSSSHYHQQ T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG030900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727699	1e-123	KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953208.1	8e-69	transcription factor TCP21-like
Swissprot	Q9FMX2	6e-37	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A368PNU6	2e-67	A0A368PNU6_SETIT; Uncharacterized protein
STRING	Pavir.Aa01128.1.p	1e-97	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG030900.1.p