PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG069600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 315aa    MW: 33209.8 Da    PI: 5.3884
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG069600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1537.2e-17143195358
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  Pavir.1NG069600.1.p 143 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 195
                          68***************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-18141205IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185143195IPR004827Basic-leucine zipper domain
PfamPF001703.1E-14144193IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-13144196No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-13145196No hitNo description
CDDcd147021.24E-22146196No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKKCASELEL EAFIRSRDDA AAAAAAAEHK PGHDIAAQAA FAAGVFSPGD LSGFSFADSN  60
TLNGSIPNHL WSHNHNVRHP AVSTTIESQS SICAAAAASP TSATNLYLKE SQTLGGTSGS  120
DSDSESLLDI EGGPCEQSTN PQDVKRMRRM VSNRESARRS RKRKQAHLAD LETQVDQLRG  180
ENASLFKQLT DANQQFTTAV TDNRILKSDV EALRVKVKLA EDMVARGALS CGLGSLGLSP  240
VLNPRQACRG PDVLSGLDFT GGDDACFAGL SPTEQVQNSP LQSLASLENR MNSEVTSCGG  300
PGVDVWPWDA GLSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRSRKRK
2157164RRSRKRKQ
3159164SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11070.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG069600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346890.0BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
GenBankJX4699220.0JX469922.1 Zea mays subsp. mays clone UT3178 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951740.10.0bZIP transcription factor RISBZ4 isoform X1
SwissprotQ6H5001e-136RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLK3YU950.0K3YU95_SETIT; Uncharacterized protein
STRINGPavir.Aa03364.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.15e-41basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]