PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG080400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 304aa    MW: 32903 Da    PI: 6.4278
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-072532862154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Pavir.1NG080400.1.p 253 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 286
                          469*****************************87 PP
2ELK26.91.1e-09207228122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++L+++Y+++L+++++E++
  Pavir.1NG080400.1.p 207 ELKNELKQGYKEKLVDIREEIL 228
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194286IPR005540KNOX1
PfamPF037901.4E-164582IPR005540KNOX1
SMARTSM012561.3E-2596151IPR005541KNOX2
PfamPF037916.7E-16104150IPR005541KNOX2
PROSITE profilePS5121310.057207227IPR005539ELK domain
SMARTSM011880.0023207228IPR005539ELK domain
PfamPF037891.8E-6207228IPR005539ELK domain
PROSITE profilePS5007111.353227290IPR001356Homeobox domain
SuperFamilySSF466897.27E-16229292IPR009057Homeodomain-like
SMARTSM003893.4E-10229294IPR001356Homeobox domain
CDDcd000861.87E-11230291No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24234291IPR009057Homeodomain-like
PfamPF059208.3E-18247286IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSFHYPDHGL TMDAAAAAAA AAAAAAASSP NPSGFSPGVG GEREKAAIAA HPLYERLLEA  60
HVACLRVATP VDQLPRIDAQ IAARPPPLAA AAGAAAAGGP SGGEELDLFM THYVLLLCSF  120
KEQLQQHVRV HAMEAVMGCW DLEQSLQSLT GASPGEGTGA TMSDDEDNQV DSEANMFDGN  180
EGSDGMGFGP LILTEGERSL VERVRRELKN ELKQGYKEKL VDIREEILRK RRAGKLPGDT  240
ASILKAWWQA HSKWPYPTED DKARLVQETG LQLKQINNWF INQRKRNWHS NPTSSGEKTK  300
KKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283302RKRNWHSNPTSSGEKTKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.194800.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG080400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813953.10.0homeobox protein knotted-1-like 2
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6QFP10.0A0A3L6QFP1_PANMI; Putative knotted-like transcription factor family protein
STRINGPavir.Aa03160.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-134KNOTTED1-like homeobox gene 3