PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG084600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 354aa    MW: 38617.5 Da    PI: 5.1048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG084600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.5e-101313320127
                  NAM  20 kkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk...rknratk..sgyWkatgkdkevls 94 
                          ++ +++  +e  ++++++d+++++P dL +          +  + ++ wyf+++++ k+a+gk   +++ra++  +  W++  + k+v+ 
  Pavir.1NG084600.1.p  13 RRALRSGAVES-TFVHRIDVCSADPADLVAdlepvpgtdlAEGGYSSIWYFYCPKRYKNAQGKpsgHRQRAIAggDTCWHSETRPKPVKG 101
                          56666666666.789*************755778887754222244589********999766555444544412667**********99 PP

                  NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyr 127
                           +  ++ +  +    +g++++ ++  W+m ey 
  Pavir.1NG084600.1.p 102 LD-GATLCNLSYGRKEGSSRSFNRMGWCMTEYD 133
                          44.44555544444588999999*********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.6271151IPR003441NAC domain
SuperFamilySSF1019415.1E-1412151IPR003441NAC domain
PfamPF023653.0E-436132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAAADDASSV ALRRALRSGA VESTFVHRID VCSADPADLV ADLEPVPGTD LAEGGYSSIW  60
YFYCPKRYKN AQGKPSGHRQ RAIAGGDTCW HSETRPKPVK GLDGATLCNL SYGRKEGSSR  120
SFNRMGWCMT EYDDDEGGGG GGHVLCKVYR SSSSLARAKL KQSSSSEQTA QRSSTCNKRK  180
AMADHPQAPP NKIRHAQACA STSSYACVDQ DFYQHVDHQV QEPLLSYEPV GIDCESLFQA  240
EKEQEQVQQN TMVTAEVEQF QQNTLVATAE EEQLQQNNLV TSGEQQLQPH TMDGLLGGQG  300
YHEYGSCSAD TQFTVDEFER AFSSPWRSYV SRCYGPPTAV APTDAGFFDG LAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG084600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3IGW50.0A0A2S3IGW5_9POAL; Uncharacterized protein
STRINGPavir.J10377.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632