PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG087300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 159aa    MW: 18027.5 Da    PI: 8.8958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG087300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1408.5e-1368114551
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                          ++ rr+++NRe+ArrsR RK+ +++ L   v+eL   N++L  el++
  Pavir.1NG087300.1.p  68 RKKRRLASNRESARRSRVRKQRRLDDLSSQVAELLDTNQRLLIELNH 114
                          67899*************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-964128IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.48466115IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.65E-1068118No hitNo description
Gene3DG3DSA:1.20.5.1704.8E-968141No hitNo description
PfamPF001701.6E-968114IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQQNCVANLA CLPGLDFTSF FLPQNDLHIY DFDPLAMVGP YNCNVSTTIS SMPAGIADKQ  60
ERRSNNERKK RRLASNRESA RRSRVRKQRR LDDLSSQVAE LLDTNQRLLI ELNHMIARHA  120
RIVRENAKLR KEAADLQKRL NEMEVEEAEA APGIPEVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RRSRVRK
28087RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG087300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660928.12e-86basic leucine zipper 8
TrEMBLK3YXV14e-85K3YXV1_SETIT; Uncharacterized protein
STRINGPavir.J13105.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-06basic leucine-zipper 42