PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG087800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 147aa    MW: 15005 Da    PI: 9.5004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG087800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-11115137427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C +fa+ G C +GdrC+FaHg+
  Pavir.1NG087800.1.p 115 SMCENFAK-GSCTFGDRCHFAHGE 137
                          67******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547913.17E-14685IPR004088K Homology domain, type 1
SMARTSM003226.5E-81484IPR004087K Homology domain
PROSITE profilePS5008413.9211579IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.8E-131582IPR004088K Homology domain, type 1
PfamPF000134.4E-91781IPR004088K Homology domain, type 1
CDDcd001053.71E-121779No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-14109143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291111138IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8114142IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7117137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MANPSMATPS SFGASATAKI SIDASLAGVI IGRGGVNTKQ ISRVTGAKLA IRDHESDTSL  60
KNIALEGTFD QIMHAGAMVR ELTVNISGSA PPLAKNPPGG PHRGGGTGSN LKTQSMCENF  120
AKGSCTFGDR CHFAHGENEL RKPAAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG087800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816019.11e-87zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-65C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2S3GMQ62e-87A0A2S3GMQ6_9POAL; Uncharacterized protein
TrEMBLA0A2T7F3183e-87A0A2T7F318_9POAL; Uncharacterized protein
STRINGPavir.Aa03067.1.p3e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-46C3H family protein