PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG088700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 340aa    MW: 37055 Da    PI: 8.6646
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG088700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.6e-111957341
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                         + k  rr+++NReAAr+sR+RKka+i++Le+    L++ 
  Pavir.1NG088700.3.p 19 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQL 57
                         67999*************************865555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-81563No hitNo description
SMARTSM003386.4E-41770IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9791963IPR004827Basic-leucine zipper domain
PfamPF001701.2E-82058IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-72163No hitNo description
PROSITE patternPS0003602439IPR004827Basic-leucine zipper domain
PfamPF141441.4E-26105185IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGSGTPSTSK QQEGPRTPDA KTLRRLAQNR EAARKSRLRK KAYIQNLETS RIRLSQLEQE  60
LHRSRTQEAV FGGGVLPGGN GGLSPEAAWF DVEHARWQEE HGKMMRHLRA ALEAEEHAHA  120
AAPAADAQLR QMVDAAAAHH GVLAELKAAV AWADAFHLVS GAWASAAERC FLWIGGFRPS  180
ELIKVAVRHA EPLTEPQAMG VCGVQQWARD AEAALDHELQ VMHRSVSEAV SSDAAALLCP  240
YSDVPGYMAT MSLAIGKLAS LEAFVRQADA LRLQALHRLP QILTARQSAR CFLAIADYSH  300
RLRALSELWH TRPRHEPPAN TPPAGSSHGQ LHQSRDGLV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG088700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704240.10.0transcription factor TGAL9 isoform X4
SwissprotQ52MZ21e-117TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368PH970.0A0A368PH97_SETIT; Uncharacterized protein
STRINGPavir.Aa03015.1.p0.0(Panicum virgatum)
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.11e-90bZIP family protein