PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG090100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 434aa    MW: 46509.4 Da    PI: 8.7362
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG090100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.7e-11112149340
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                          + k  rr+++NReAAr+sR+RKka+i++Le+    L++
  Pavir.1NG090100.2.p 112 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQ 149
                          67999*************************85555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-9104155No hitNo description
SMARTSM003386.9E-5110163IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979112156IPR004827Basic-leucine zipper domain
PfamPF001701.5E-8113150IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-7114156No hitNo description
PROSITE patternPS000360117132IPR004827Basic-leucine zipper domain
PfamPF141448.6E-28198278IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAEFDQALLL YLNSQDQTSS SAIQDQPQTL NIFPSQPMHV VEPALPKGSM GANNTTPNAC  60
SGPSSKRPPP AGGSKDGKTA AVKREAGSSG GAIGSGTPST SNQQEGPRST PDAKTLRRLA  120
QNREAARKSR LRKKAYIQNL ETSRIRLSQL EQELHRSRTQ GAVFGGGILS GSNGGLSPEA  180
AWFDMEHARW QEEHGKMMRH LRAALEAEEH AAALAPAADA QLRQMVDAAV AHHGVLAELR  240
AAVARADAFH LVSGAWASAA ERCFLWIGGF RPSELIKVAV RHAEPLTEPQ AMGVCGVQQW  300
AREAEAALDH ELQAMHRSVA EAVSSDAAAL LCPYSDVPGY MAVMSLAIGK LASLEAFVRQ  360
ADALRLQALH RLPQILTARQ SARCFLAIAD YSHRLRALSE LWHNRPRHEP PATTPASGSS  420
HGPPYQSSRD GLV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG090100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513168e-60EU951316.1 Zea mays clone 695528 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951577.10.0transcription factor TGAL9 isoform X2
RefseqXP_012704240.10.0transcription factor TGAL9 isoform X4
SwissprotQ52MZ21e-130TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368PGY80.0A0A368PGY8_SETIT; Uncharacterized protein
TrEMBLA0A368PH070.0A0A368PH07_SETIT; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.33e-95bZIP family protein