PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG098400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 77aa    MW: 8327.12 Da    PI: 4.4511
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG098400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA412.6e-132862133
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
                         C +Cg +   Tp++++gp+g +tLCn+CG+ ++k 
  Pavir.1NG098400.1.p 28 CLHCGISAnvTPHMHHGPEGRRTLCNSCGIAWAKG 62
                         99***99999***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-92264No hitNo description
SMARTSM004017.0E-52276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-92761IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.4E-112862IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MEFDDDRDIG VGSGNSEVDD EVDEPARCLH CGISANVTPH MHHGPEGRRT LCNSCGIAWA  60
KGYNLEDAGI VFERRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG098400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301556.17e-32protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301561.17e-32protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301564.17e-32protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A3L6TK441e-31A0A3L6TK44_PANMI; Protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGOS03T0181600-025e-21(Oryza sativa)
STRINGORGLA03G0057700.15e-21(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-12GATA-type zinc finger protein with TIFY domain