PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG107800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 333aa    MW: 36301.6 Da    PI: 7.97
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG107800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.62.2e-075182334
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34
                         ++kr rr+++NRe+ + sR+RK+a ++ Le+ 
  Pavir.1NG107800.2.p 51 DVKRMRRMMSNRESDQCSRKRKQAHLADLETQ 82
                         68***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001701.8E-65281IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.6E-753123No hitNo description
SuperFamilySSF579597.72E-65395No hitNo description
CDDcd147023.92E-75496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MESQSAICVA SPTSSTNISL KKSQTLGGTS GSDYDTKFEG APFEQSTNPQ DVKRMRRMMS  60
NRESDQCSRK RKQAHLADLE TQENPKRSRT SYLRRKGPSE QVDQVEQLTD ANQQLTTSVT  120
VTDNRILKSD VRALRVKLAV DMVARGALAS PASSSKISLK RSQTLRGTSS LDYDTKFEGA  180
PFEQGTNPQD VKRMQRMVSY RESDQCSEQV DHVEQLTDAN QQLTTAVTVR DNRKLKSDVR  240
AKVKLAEDVV ACGALSCGLG SLGLSSPVLN PQQCRVPDVL PVLEVPADDR CFTGLSPTVQ  300
VQNSSLQSLS LESFDNRMTS EVTSCAGAGV DV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.94000.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
UniprotTISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG107800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.19e-66basic leucine zipper 9-like isoform X1
SwissprotQ6ETX08e-49RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A194YMZ42e-64A0A194YMZ4_SORBI; Uncharacterized protein
TrEMBLA0A1Z5RLL92e-64A0A1Z5RLL9_SORBI; Uncharacterized protein
STRINGPavir.Aa03143.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-23basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]