PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG116500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 531aa    MW: 56470.6 Da    PI: 7.8912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG116500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11309352452
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Pavir.1NG116500.1.p 309 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 352
                          78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-16307375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15308373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9309352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-5320359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MVSLIQPWRD SVCRCVPGWA YKDGRAFMEL PAHGLATSAS LPAQQQFYQM AAFMGCESGE  60
IEVGMSTAAS GSPMSLESSL HQVFSEDFFQ QSLLEEMLQL PPTGPSSPSS SLPSVSVGSP  120
AAEGSTSLPR TIAVTPAATP SSGSERQVVP VPVPPHPLHP RPPLASPFGR HGRVHFPSAD  180
ADDAAMAEAM LAVISASSSS ALPTTPSKST AAPPPGNHHH QHHSARRWPR RRGTTATAFR  240
AYNAALAPRA PWRPPGAPGQ RMIKMGISIL RRMHMLRFSR ERAGSTAMAQ RSQEEEEDQP  300
PAPTSSQLNH MISERRRRER LNESFEALRG LLPPGSKKDK ATVLAKTLDY MNILVAQIAD  360
LEARNRSLES RAHHQHSNGG CGCKERPAYS STELQEVVVL QGLSGASERV HVHVTAAGAS  420
TPSSSSAAAG RREVTVRVEA RAAHGDVAEL VARVLAVIKE MGCFTVVAVD GRRPGDGIAH  480
ATFTLRATSS NMDADSNLCC VQAGEFDEAS LRGAVMKAAE DSAPPPPSDD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313318ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG116500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792423.10.0putative transcription factor bHLH041 isoform X2
TrEMBLA0A2T7F3R80.0A0A2T7F3R8_9POAL; Uncharacterized protein
STRINGPavir.J40109.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-15bHLH family protein