PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG120900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 526aa    MW: 54801.3 Da    PI: 7.8992
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG120900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084444821854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +Fe+  ++yp+ +e+  LA++ gLt +qV++WF N R +
  Pavir.1NG120900.1.p 444 MFENflHPYPKDHEKDVLASRSGLTRNQVSNWFINARVR 482
                          5776679******************************88 PP
2BELL36.61.1e-12302376472
                 BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsa......kpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e q+ +++Ll++l+ +d++Y+q+ +++q   + F+a +  g+a       + +++A +a+S  +r L+++ia+ i
  Pavir.1NG120900.1.p 302 EAQRVRSHLLKMLHLMDEKYNQCLNEIQSTTAKFNALMQPGAAgvvssgSIRAAFAHRAVSAVYRGLRQRIAGEI 376
                          778889******************************999998833333345789*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-4231374IPR006563POX domain
PfamPF075261.6E-21236373IPR006563POX domain
PROSITE profilePS5007111.402423486IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-25426499IPR009057Homeodomain-like
SMARTSM003892.8E-6426490IPR001356Homeobox domain
CDDcd000863.00E-11426487No hitNo description
SuperFamilySSF466891.03E-15427496IPR009057Homeodomain-like
PfamPF059202.4E-15443482IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MASNPSTFAP IGVDAMTGGY FMAGGGGGGM MSADAPHFHP SVLLEHGGFG FGFGDAAVGA  60
AAAPSDLGVN YAANNAMLAS FASHLFATAA APPLDDHFGG RTPPEMDEGY GAGSDGSSAA  120
SLQCPGHSGA MAVWSSSSSS KKPAGTWITA GGSRAVSVHE PYYLAGVPDV AGFHYPLIAA  180
AAANAPASSE LSLTLCSKSF PDSALNGAEQ CSSGASRSAL TELPQARPRP AHFSVVVARS  240
RYAAVAQAVL NDVAGHLLDG VADVAADSCS GGARPSSGSV GARAPTVVSS NRLLASSQDG  300
GEAQRVRSHL LKMLHLMDEK YNQCLNEIQS TTAKFNALMQ PGAAGVVSSG SIRAAFAHRA  360
VSAVYRGLRQ RIAGEIIAAA SRAAGCWGES SSSVTAAGDA ERSWESAFIR KHWAAQQLRR  420
GEQQCWRPQR GLPEKSVAVL KAWMFENFLH PYPKDHEKDV LASRSGLTRN QVSNWFINAR  480
VRLWKPMIEE MYEDQKKSSG GQGAAMEPHT SKRRIREVEE GQGTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG120900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416741e-172BT041674.1 Zea mays full-length cDNA clone ZM_BFb0029O24 mRNA, complete cds.
GenBankBT0549591e-172BT054959.1 Zea mays full-length cDNA clone ZM_BFc0113I21 mRNA, complete cds.
GenBankBT0663911e-172BT066391.1 Zea mays full-length cDNA clone ZM_BFc0036O04 mRNA, complete cds.
GenBankBT0857031e-172BT085703.1 Zea mays full-length cDNA clone ZM_BFc0049M04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796845.10.0homeobox protein ATH1-like
TrEMBLA0A3L6QE640.0A0A3L6QE64_PANMI; Homeobox protein ATH1-like
STRINGPavir.Aa02885.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-51homeobox gene 1