PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG122400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 123aa    MW: 13322.1 Da    PI: 11.9171
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG122400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.71.9e-082281956
                         HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
             Homeobox  9 keqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                         +e++e+ e+  +  +n+ p++ +  eLA+k            ++ +qV++WF+NrR+  +
  Pavir.1NG122400.1.p 22 PEEVEQIEARLQplRNPSPDRVALVELARKFsasterigkvVIQPKQVRTWFCNRRYYSR 81
                         66677777777754699999999****************999**************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00561387IPR001356Homeobox domain
CDDcd000861.52E-61981No hitNo description
PROSITE profilePS500719.8311983IPR001356Homeobox domain
SuperFamilySSF466898.13E-92082IPR009057Homeodomain-like
PfamPF000466.1E-62181IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-72278IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MARPPSARSD GVLAAAPFRF LPEEVEQIEA RLQPLRNPSP DRVALVELAR KFSASTERIG  60
KVVIQPKQVR TWFCNRRYYS REGKAARAAQ AQRNLAARTH RQLAAGSSAA VHAGSSSGGG  120
HF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG122400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.11e-21protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.11e-21protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.11e-21protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.11e-21protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A3L6QJ934e-63A0A3L6QJ93_PANMI; Uncharacterized protein
STRINGPavir.J12414.1.p3e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.14e-13sequence-specific DNA binding transcription factors;sequence-specific DNA binding