PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG124800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 372aa MW: 43620.1 Da PI: 7.6533

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG124800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.3	2.5e-23	110	200	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 fYn+YA++ GFsvr++k ++ kr+g r+f Cs+eg+r+ + + ++ rr+ra t +C+akl++k+++ +g+w+v+k eHnH l Pavir.1NG124800.1.p 110 FYNKYARDKGFSVRRKKVRRAKRSGALLFRHFLCSREGQRDAKWLDkDVCGRRPRALTLWECQAKLEIKLDQaRGVWYVQKNLDEHNHRL 199 9*************************************99865546899*****************9*************99 PP FAR1 90 a 90 Pavir.1NG124800.1.p 200 D 200 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-21	110	200	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-8	322	356	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAQWLTDHSH SNHDQTRKEQ DRIVLELFFS PIGSAIMSKV GDEEELDFYL EPPDDNMSDR 60 NPTSKEYGNA SYDEEMFRTM SHAAARHTTL DECWDLVKKA FSSEMEAYIF YNKYARDKGF 120 SVRRKKVRRA KRSGALLFRH FLCSREGQRD AKWLDKDVCG RRPRALTLWE CQAKLEIKLD 180 QARGVWYVQK NLDEHNHRLD TQDEVPFLWS HRKMKDFQKT EIMAMEGVGI RKHVIMDVLQ 240 YRYGGYGEVG IIRKDAYNFS SRYKRSRIAD GDAMAVLGLM QSRQKDDPDF YYDYQMDGDE 300 HLKTMFWCDS QSHMDYQSFG DVVIFDSTYR MNRYKMPFVP FVGMNHHRST TVFGCGQWRS 360 QGASQAGADS R*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAQWLTDHSH SNHDQTRKEQ DRIVLELFFS PIGSAIMSKV GDEEELDFYL EPPDDNMSDR  60
NPTSKEYGNA SYDEEMFRTM SHAAARHTTL DECWDLVKKA FSSEMEAYIF YNKYARDKGF  120
SVRRKKVRRA KRSGALLFRH FLCSREGQRD AKWLDKDVCG RRPRALTLWE CQAKLEIKLD  180
QARGVWYVQK NLDEHNHRLD TQDEVPFLWS HRKMKDFQKT EIMAMEGVGI RKHVIMDVLQ  240
YRYGGYGEVG IIRKDAYNFS SRYKRSRIAD GDAMAVLGLM QSRQKDDPDF YYDYQMDGDE  300
HLKTMFWCDS QSHMDYQSFG DVVIFDSTYR MNRYKMPFVP FVGMNHHRST TVFGCGQWRS  360
QGASQAGADS R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG124800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696943.1	1e-108	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9FM97	1e-105	B9FM97_ORYSJ; Uncharacterized protein
STRING	OB10G13790.1	2e-96	(Oryza brachyantha)
STRING	Sb01g014270.1	8e-93	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-52	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1NG124800.1.p