PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG128300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 207aa    MW: 21688.4 Da    PI: 11.1205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG128300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.7e-083190553
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C............TTS-.STCHHHHHHHHHHHHH CS
                  HLH  5 hnerErrRRdriNsafeeLrellPk.as.........kapskK.lsKaeiLekAveYIks 53
                          + +Er+RR+++N  +++L +l+   +s          ++++  ++  + Le+A  YI++
  Pavir.1NG128300.1.p 31 RKTVERNRRNQMNALYSRLDQLVRAgSSpssapqaavLQRGPPaMTRPDRLEEAAAYIRQ 90
                         5789*********************766*********8888888**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014471.07E-5616No hitNo description
PROSITE profilePS508888.6192691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.36E-731106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-831107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-53290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDMPPPPPPP PPPPPPPHFG GPAAGGGRPD RKTVERNRRN QMNALYSRLD QLVRAGSSPS  60
SAPQAAVLQR GPPAMTRPDR LEEAAAYIRQ TTERVERLKE RKRELTAARA SSSSSQGSSS  120
AGGTAEVEVQ HLGSGLHAIL VTGAPPSDGA SFHRAVRAVE EAGGKVQNAH FSVVGARAVY  180
TIHTLVAEGG IERVVQRLKA ALRGDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG128300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798292.12e-98transcription factor bHLH162-like isoform X1
TrEMBLA0A3L6QID13e-98A0A3L6QID1_PANMI; Uncharacterized protein
STRINGPavir.Aa02869.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938