PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG129100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BES1

Protein Properties

Length: 384aa MW: 38771 Da PI: 10.1764

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG129100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	147.8	8.7e-46	45	140	4	97
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspe 91 r p+ ErEnn+rRERrRR ++++i++GLRa+Gny lp ++DnneVl+ALc eAGwvve+DGttyr+g++p+ + + g sa +sp Pavir.1NG129100.1.p 45 LRVPSSTERENNRRRERRRRLVTSRIFSGLRAHGNYILPRQCDNNEVLRALCDEAGWVVEPDGTTYRRGCRPPppHMHGGFGGSAPVSPG 134 6899********************************************************************974455567889999999 PP DUF822 92 sslqss 97 ss+ + Pavir.1NG129100.1.p 135 SSYPVT 140 999844 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.4E-43	46	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MHGGGMVGAG AGAGAGGSRG GGGDKGKGGG RSGNGSGARG AMAPLRVPSS TERENNRRRE 60 RRRRLVTSRI FSGLRAHGNY ILPRQCDNNE VLRALCDEAG WVVEPDGTTY RRGCRPPPPH 120 MHGGFGGSAP VSPGSSYPVT PTAPYGLGSG SSHLTLGRGG GLFYGAAARG AAGSNGLADW 180 FRRLPGAPDT GASSSSAPVT PQNGSPPQTM FERWAAENNN AAAGAFSLQP RGAAGLSRYG 240 AFPQQPITMP PSPVGGGAPV DPVRLLAGIQ ISTAAAAAAN NNRVRAYSPL GTPPALPSLF 300 GPGAPSFMLR APGPVLQGSG GPWAAPAPAP SPTARAGGGG DVEMTPREFS FAWEGESVTE 360 DYADDEDALE LTLGNSKTRA DRA*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MHGGGMVGAG AGAGAGGSRG GGGDKGKGGG RSGNGSGARG AMAPLRVPSS TERENNRRRE  60
RRRRLVTSRI FSGLRAHGNY ILPRQCDNNE VLRALCDEAG WVVEPDGTTY RRGCRPPPPH  120
MHGGFGGSAP VSPGSSYPVT PTAPYGLGSG SSHLTLGRGG GLFYGAAARG AAGSNGLADW  180
FRRLPGAPDT GASSSSAPVT PQNGSPPQTM FERWAAENNN AAAGAFSLQP RGAAGLSRYG  240
AFPQQPITMP PSPVGGGAPV DPVRLLAGIQ ISTAAAAAAN NNRVRAYSPL GTPPALPSLF  300
GPGAPSFMLR APGPVLQGSG GPWAAPAPAP SPTARAGGGG DVEMTPREFS FAWEGESVTE  360
DYADDEDALE LTLGNSKTRA DRA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-20	66	123	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-20	66	123	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-20	66	123	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-20	66	123	392	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG129100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819084.1	1e-137	protein BZR1 homolog 4-like
TrEMBL	A0A3L6QEY5	1e-145	A0A3L6QEY5_PANMI; Uncharacterized protein
STRING	Pavir.Aa02766.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18666	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18890.1	4e-22	BES1/BZR1 homolog 3

Link Out ? help Back to Top
Phytozome	Pavir.1NG129100.1.p