PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG133800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 255aa    MW: 27048.3 Da    PI: 6.0439
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG133800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-11126173552
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                          kr +r   NR +A+rsR RK+++i eLe+ v +L+ e +aL  ++  l
  Pavir.1NG133800.1.p 126 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQMEVSALSPRVAFL 173
                          899**********************************99998776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-13122186IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.634124180IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11126180No hitNo description
Gene3DG3DSA:1.20.5.1709.8E-12126180No hitNo description
PfamPF001701.2E-9126174IPR004827Basic-leucine zipper domain
CDDcd147031.68E-23127177No hitNo description
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAQLPPRAPS AAAQDPWSAA GDFLGFAAAR RGAHRRSASD SAAFLEAVPM DDVIGGGDDF  60
DRLDDEQFMP MFSDVDAPAV SDGAGGAGGE RAGDAHLMDM GDAEDGMAAS SPAGARAAAD  120
GVADPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ MEVSALSPRV AFLDHQRSLL  180
TVGNSHLRQR IAALAQDKIF KDAHQEALKK EIERLRQLFQ QQQIKATTGG ADIATAASIQ  240
ARQELLACEG AAIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.210480.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG133800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By white light. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828193.11e-158basic leucine zipper 19-like
SwissprotQ6K3R91e-107BZP19_ORYSJ; Basic leucine zipper 19
TrEMBLA0A0A9FPX71e-159A0A0A9FPX7_ARUDO; Uncharacterized protein
STRINGPavir.Aa02794.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-52bZIP family protein