PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG143300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 191aa MW: 22500.2 Da PI: 9.3817

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG143300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.6e-21	6	96	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn YA + GFs r ++ k++ ++e+t+r+fv s eg+r+e++ + t+++r++ra tr+gC+a++ v++++ +g w+vt+++ H+H++ Pavir.1NG143300.1.p 6 EFYNGYAFHKGFSGREDRVKYKPSTKEVTWRRFVYSFEGYRSEKHFErTDQKRQPRALTRCGCNARFDVQRSEsSGIWYVTDFVDVHSHPF 96 6****************************************998768999***************999*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-19	6	96	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MEDFFEFYNG YAFHKGFSGR EDRVKYKPST KEVTWRRFVY SFEGYRSEKH FERTDQKRQP 60 RALTRCGCNA RFDVQRSESS GIWYVTDFVD VHSHPFDKPE HAFVLRSHRG LNPYRSLEGG 120 GSRAGAWWAS SVPDHGCDGD QPRWSRRDWI SFAGSVKKIS RQKKVKIQGN DVEFMMNHMC 180 QMQEKDLEFF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG143300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680951.1	1e-62	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_022685196.1	7e-62	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8JE97	2e-62	A0A2T8JE97_9POAL; Uncharacterized protein
TrEMBL	K3YNE3	9e-61	K3YNE3_SETIT; Uncharacterized protein
STRING	Si015784m	1e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1NG143300.1.p