PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG166200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 315aa    MW: 33207.2 Da    PI: 10.3124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG166200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30242299359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  +p ++++tYeg+H+h+
  Pavir.1NG166200.1.p 242 DDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYEGDHRHD 299
                          99***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.2E-16192238IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-31228299IPR003657WRKY domain
PROSITE profilePS5081130.699235301IPR003657WRKY domain
SuperFamilySSF1182901.24E-25236299IPR003657WRKY domain
SMARTSM007741.6E-34240300IPR003657WRKY domain
PfamPF031064.2E-25242298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MITIDDLMSC GGGDSGGGRA SVVPGGDGQA ARPRPRQMMM MEAVGDHQLT VSRIRTAVSM  60
LGRRTGHARF RRGPAAAVVV EHPSSPPDHQ QPPGSAAAPG VMTLGLADFV KGRGRDEAAA  120
FSASASGDRD SSSLPSTTTL TSLTVGEGSV SNGRFPPAGG HPAGTPRFPA VSMPQQQPAA  180
SDYYHTPGAA PRSKCADRAR SENDAGKAHA GRCHCSKKRK SRVRRVVRVP AISSRNADIP  240
PDDYSWRKYG QKPIKGSPYP RGYYKCSTVR GCPARKHVER DPGEPAMLIV TYEGDHRHDA  300
DAAAAPPEHM STNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20228299272WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in aleurone cells. In seeds, predominantly present in the plumule, radicle and scutellum of the embryo. {ECO:0000250|UniProtKB:Q0JEE2}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG166200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946851e-109FP094685.1 Phyllostachys edulis cDNA clone: bphyem111b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825254.11e-139WRKY transcription factor WRKY51-like
SwissprotQ6IEN12e-62WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A3L6RVR91e-152A0A3L6RVR9_PANMI; Putative WRKY transcription factor 11
STRINGPavir.Aa02610.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-51WRKY DNA-binding protein 11