PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG186200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 349aa    MW: 38479.6 Da    PI: 6.5072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG186200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.6e-29169227259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s  +C ++k+vers+ +p++++ tY geHnh 
  Pavir.1NG186200.1.p 169 SDVWAWRKYGQKPIKGSPYPRGYYRCSSFkECAARKQVERSHLNPNTFILTYIGEHNHA 227
                          79************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28156229IPR003657WRKY domain
PROSITE profilePS5081129.551163229IPR003657WRKY domain
SuperFamilySSF1182907.59E-25167229IPR003657WRKY domain
SMARTSM007742.2E-33168228IPR003657WRKY domain
PfamPF031061.7E-24170226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEEHHFNNW DLGAVMRTGN LLHLSSPRQA DIPAALLHLQ TQTQKKTVMP TPTQEPAKKT  60
DANVGWRFPD LCAGTRQDDD ELLRDLLATY PPLRLPSPRP PPPQPQQQQQ LVVTAADVPP  120
PHVCAALASA SARLQTIVCP VLGGLSNPNR RRNQMKKMVR HVPADGSSSD VWAWRKYGQK  180
PIKGSPYPRG YYRCSSFKEC AARKQVERSH LNPNTFILTY IGEHNHAMPT HQSSLARTTR  240
HKFTSSMAPL PPPSLVVGGA DTNDVQHQQP SPILTSMPTV GLSPTMPMCM PSMEEDNVED  300
KDELLVEDME IAGEGELLFL NTDGDYATPL ESLSSLFDMV NESSLSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-18153230380Disease resistance protein RRS1
5w3x_D9e-18153230380Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG186200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798400.11e-154probable WRKY transcription factor 27
TrEMBLA0A2S3GN961e-153A0A2S3GN96_9POAL; Uncharacterized protein
STRINGPavir.Aa02702.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-41WRKY DNA-binding protein 27