PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG186700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 361aa    MW: 38837.1 Da    PI: 4.3228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG186700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.91.2e-20101381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          lppG++F+P d+elv +yL ++++g++  +++  v +++    ++ Pw+L  ++ ++ e+e yf ++ +     g+ k+     g+Wk++
  Pavir.1NG186700.1.p  10 LPPGVHFRPDDDELVEFYLLPRARGEPapFPVGVVvVDDDAAGSTLPWELLeRHGRGAEDEAYFLVRGSGDGGDGQDKRGCGGGGTWKSQ 99 
                          79*************************6544434425555678899****733444456688999998888887777777999*****76 PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              ++ + ++++ + ++ L ++ gr ++g +  Wvmhey+l
  Pavir.1NG186700.1.p 100 K---RLAHGGEKVRWSRHNLNLHMGRGESGGSVGWVMHEYAL 138
                          4...5777688999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-294153IPR003441NAC domain
PROSITE profilePS5100525.55610154IPR003441NAC domain
PfamPF023652.3E-1411138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSSVAGMLGL PPGVHFRPDD DELVEFYLLP RARGEPAPFP VGVVVVDDDA AGSTLPWELL  60
ERHGRGAEDE AYFLVRGSGD GGDGQDKRGC GGGGTWKSQK RLAHGGEKVR WSRHNLNLHM  120
GRGESGGSVG WVMHEYALTD PSCPPLKICH VAFTGHGKNR KRLPVPGGGD AVDDQTEEEA  180
SKRARVAAGG SASSGSGSTT TVNQDYYSGL VGNSSEEDQE QPKQHSLEWI IRELSNDDML  240
ESSFPSSVDQ NFFQQFAQAV APTTEQQAAV PEPEHVMVTL LPVVNETAGM VELQASMAPM  300
EIAAGMAELE NPYYQPMMTQ PEFLAPMGVT PDESCGLSHI GDMEPGAQQD FVEWDGFLFY  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-11813813140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG186700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.11e-91NAC domain-containing protein 48
TrEMBLA0A2T8KV811e-104A0A2T8KV81_9POAL; Uncharacterized protein
STRINGPavir.Aa01831.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-09NAC domain containing protein 76