PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG188500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 651aa    MW: 73084.2 Da    PI: 8.5569
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG188500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.1e-1475118145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + rW++eE ell ++v+++G+++W tIa  ++  R +  c srw 
  Pavir.1NG188500.1.p  75 KCRWSPEENELLTQLVNKHGTKNWQTIACALP-DRNAHACLSRWK 118
                          569*****************************.***********7 PP
2Myb_DNA-binding45.22.1e-14127169145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W+++E+++l++a++ +G++ W + a++++ gRt + +k++w+
  Pavir.1NG188500.1.p 127 KEAWSQQEELRLIRAHQIYGNK-WCKMAKHFP-GRTNNALKEHWR 169
                          579*******************.*********.***********7 PP
3Myb_DNA-binding41.92.3e-13335378145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +grW +eE e l + v+++G ++W tIa+ ++ gR + qc+ rw 
  Pavir.1NG188500.1.p 335 KGRWLAEENEMLTKMVTKHGLKSWQTIASAIP-GRNAQQCRIRWT 378
                          79******************************.***********5 PP
4Myb_DNA-binding34.35.7e-11388429245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            W+++E+++l++a++ +G+  W +  ++++ gRt   +k++w+
  Pavir.1NG188500.1.p 388 EDWSEQEELKLIRAHQIYGSQ-WLKMVKHFP-GRTNHALKEHWR 429
                          67*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.28970119IPR017930Myb domain
SuperFamilySSF466893.19E-2673168IPR009057Homeodomain-like
SMARTSM007171.4E-1174123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-1977130IPR009057Homeodomain-like
CDDcd001675.13E-1077121No hitNo description
PfamPF139219.8E-1378138No hitNo description
PROSITE profilePS5129421.716122176IPR017930Myb domain
SMARTSM007173.1E-14126174IPR001005SANT/Myb domain
CDDcd001671.42E-10129169No hitNo description
Gene3DG3DSA:1.10.10.601.3E-18131176IPR009057Homeodomain-like
PROSITE profilePS5129418.77330385IPR017930Myb domain
SuperFamilySSF466891.87E-23333428IPR009057Homeodomain-like
SMARTSM007171.3E-11334383IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-20336388IPR009057Homeodomain-like
CDDcd001673.64E-9337381No hitNo description
PfamPF139219.9E-13338395No hitNo description
PROSITE profilePS5129413.775386436IPR017930Myb domain
SMARTSM007173.1E-10386434IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-15389436IPR009057Homeodomain-like
CDDcd001674.30E-8390429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MEQSSGGMPR QRRDVSSTSH SGNSNAVAED MSGIPHETVK HYQDVESEKT GVPPCKKSRH  60
SFNECSSLKN LERTKCRWSP EENELLTQLV NKHGTKNWQT IACALPDRNA HACLSRWKYI  120
LDPAINKEAW SQQEELRLIR AHQIYGNKWC KMAKHFPGRT NNALKEHWRG SMKRKLDSYL  180
ASGLLEQVPD LHENLSIPQS NQSDIPKDSK VSSDRIRFSS IISTRSKFKQ KIRELSEDAD  240
ASVGESSDFI YAKAFDAHST RVSENIIAKP QKCATARKKL DLVSSPVKLK SDVPPETVKQ  300
HCQEIESEKT EGPPCKKNGY CFKQGSTLKN SERTKGRWLA EENEMLTKMV TKHGLKSWQT  360
IASAIPGRNA QQCRIRWTRS LDPAINKEDW SEQEELKLIR AHQIYGSQWL KMVKHFPGRT  420
NHALKEHWRG RMKGKLNYYL ASGMLEQIPD LQENLSVPEG SHSEIPKDGQ GSSERNRPTS  480
LPLRPKSKSD LSELDENAYT SEDESSDCMF PKGLDADSAK VSEKVMAKSK QRARARRKLD  540
FLSTPVELKV CTAAASCQRP PPKMEQTIPA SDNSSPSDAC QDIPQNTASE RVVVIPTAAS  600
NPHNDVHSWA APDPCSPEIH KANASDPLDL SYCDDLIIDS PPYLHGSSFI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23784376110B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.61520.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG188500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791248.10.0transcription factor MYB3R-2-like
TrEMBLA0A2S3GN720.0A0A2S3GN72_9POAL; Uncharacterized protein
STRINGPavir.Aa02683.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.15e-39myb domain protein 3r-4