PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG194500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 371aa    MW: 40254.4 Da    PI: 4.3254
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG194500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.16.5e-1441401124
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiy.kvePwdLp.kkvkaeekewyfFskrdkkya....tgkrknr.atksg 81 
                          lppG++F+P d+e v +yL+++++g++  +++  v+ + d    + Pw+L  ++ ++ ++e yf ++++        +g +++r     g
  Pavir.1NG194500.1.p   4 LPPGVHFRPDDDEFVEFYLRPHASGEPasFPAGVVVVDDDAAgCTLPWELLdRHGRGADDEAYFLVRSSGDGDgqekRGAHQERgCGGGG 93 
                          79*************************5544433455555550568****734555677799999987654332222666777866779* PP

                  NAM  82 yWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmh 124
                          +Wk++ +  +  s+    ++++ +  + L ++ gr ++g +  W+ h
  Pavir.1NG194500.1.p  94 TWKSQKRLAHGGSRvddaGEKVHWSLHNLNLHMGRGESGGSVGWICH 140
                          ***998854433333343788889999*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-182140IPR003441NAC domain
PROSITE profilePS5100517.2924166IPR003441NAC domain
PfamPF023651.2E-85140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLGLPPGVHF RPDDDEFVEF YLRPHASGEP ASFPAGVVVV DDDAAGCTLP WELLDRHGRG  60
ADDEAYFLVR SSGDGDGQEK RGAHQERGCG GGGTWKSQKR LAHGGSRVDD AGEKVHWSLH  120
NLNLHMGRGE SGGSVGWICH VAFTGHGKNR KRLPGGGDVV DDQTEEPASK RARVAAPGTG  180
GSASSGSGST TTTVDHQDYS GVWRSSEEHQ EPNQISLEWI SRELFNDDLQ QNSFPCIEFA  240
QAAAPTSEQQ AVPEHVMVTP LPMVQETVGM QELQEFMASM DRQEFIAPLP MVVQETNGMA  300
EPQKSMAPMD QQETAGMAEL DNPYQPMMAQ LEFLPPMGVT LDESCGLSHI GDMEPGAQQD  360
FVEWDGFLFY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG194500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.12e-81NAC domain-containing protein 48
TrEMBLA0A2T8KV816e-98A0A2T8KV81_9POAL; Uncharacterized protein
STRINGPavir.J28923.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.13e-08NAC domain containing protein 60