PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG212500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 97aa    MW: 10430.7 Da    PI: 4.8791
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG212500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.35.2e-241877260
                         HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
         HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                         Fl k+ye+++d++ + ++sws ++  sfvv+++ efa ++Lp+yFkhsnf+SF+RQLn+Y
  Pavir.1NG212500.1.p 18 FLLKTYEMVDDPSSDAVVSWSdASDGSFVVWNPPEFAARMLPTYFKHSNFSSFIRQLNTY 77
                         9********************66669*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-251378IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-211479IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-211496IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-141841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.4E-201877IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-145769IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-147082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MEVAGARGSG GGGGPAPFLL KTYEMVDDPS SDAVVSWSDA SDGSFVVWNP PEFAARMLPT  60
YFKHSNFSSF IRQLNTYVRN DHPTFPFPPC PALLCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-161677262Putative transcription factor
5d5x_B3e-161677262Putative transcription factor
5d5x_E3e-161677262Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG212500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9656841e-79EU965684.1 Zea mays clone 287947 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.12e-38heat stress transcription factor A-5
SwissprotQ6K6S52e-35HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A1E5VZU53e-42A0A1E5VZU5_9POAL; Heat stress transcription factor A-5
STRINGPavir.Aa02052.1.p7e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.13e-16heat shock transcription factor A1E
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]