PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG214100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 412aa    MW: 46145.2 Da    PI: 6.3275
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG214100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.13e-20143228182
             trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                          +Wt ++v++L+ a+++++e++ +   g++++++W+ vs++m +rgf  sp+qC++k+ +lnk+y++++e+ + +t ++ +++ +++
  Pavir.1NG214100.1.p 143 KWTSDMVKLLVSAVSYVDEDMDAdpgGARRMGKWRLVSSAMTKRGFPASPQQCEDKFHDLNKKYRRVTEILGLGTaCKFVENPALL 228
                          7*********************845458*******************************************999537777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-19141257No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRLQIKCCCL VCILSLAATV GTAVKTSTLD QPLAVISFLQ IARGQAEACV FSSEMEGDLP  60
QHALIPGGAP CDLAQQFHFH LAAQPQMLDQ TVHAHQVTLA APAAAADQML ELGNVEEPPL  120
GLKEDDATGK AAATPSPQWH RVKWTSDMVK LLVSAVSYVD EDMDADPGGA RRMGKWRLVS  180
SAMTKRGFPA SPQQCEDKFH DLNKKYRRVT EILGLGTACK FVENPALLEE ADLPVKLKEK  240
AKKLLSSKHL HFEQMCSYHN RNRACLLDDP ALQRMLRLMA RMRPSKKYKF EHDKDNQILI  300
SDDDEGGEFN RDLDVTAGDH VTRKLPQAAA QGSGGPADAA QVQREQLEIK IDMLKIKKRH  360
LERMRSIMEQ EWELQKMRMD NEIMDLENDQ MDLELELELK EMEMGIKPKR I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.73904e-31callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG214100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800639.10.0uncharacterized protein LOC112880301
TrEMBLA0A2T7F6K50.0A0A2T7F6K5_9POAL; Uncharacterized protein
STRINGPavir.J11642.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5643122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.13e-39