PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG218700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 588aa MW: 68643.6 Da PI: 7.8787

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG218700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.3	1.3e-09	10	46	54	90
FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++++t+Cka+l++++++d+ w+v + +eHnH+l+ Pavir.1NG218700.1.p 10 KTSSSKTNCKAMLHLHRTSDDAWVVVEHISEHNHPLS 46 67899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-7	10	46	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-25	168	260	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.138	452	488	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-6	460	487	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.7E-5	463	490	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MQDNPGANVK TSSSKTNCKA MLHLHRTSDD AWVVVEHISE HNHPLSETYR EKKHWPSHHH 60 LDKYTKDLIR LLRNNNIGIT KLYTILGDFL GSMQNVPATK ICLKLFCQKI NREQAEDDIK 120 KTLALVRELC KSDPGFMFSV DTDDDGRIKT FMWTNSHSRM QYDHFGDVVS FDTTFQTDLY 180 DMPFGLFVGV NNHFQTVLLG GVLMTDEKIE SFRWVFKEFA SMMGGKEPKT ILTDQCRAME 240 VAIAEEWKNT IHQWCKWPVL KRVKECVRTK YTSIKEFRDK FHFMLNEMLT IEEFENSWAT 300 LWKQYGLQDN DFLKQIYETR EKWVKSYFKG VFYAGMTSTQ RSESANHMLK NILSPGRTLH 360 KFIDQYMKLQ YIRDEDENYE ERRNKLNSKR VTTGGPLVVH AHKIYTLKVF ALFCELKEDS 420 ELYRTVELIQ GQQYLVEHYN LDRVQHWCKG RYTIDIVDNG RKYSCECGLF EHFGLPCSHV 480 LRVMISCGAQ QLPECMVVQR WTKKARHVLP EELSQYKKDN LALLAQTYRH SSLLLKALQF 540 IEMGDSNAES HTVAMKVLDD GIESLTEISK QKDGMGLGHT QTKNQYT*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MQDNPGANVK TSSSKTNCKA MLHLHRTSDD AWVVVEHISE HNHPLSETYR EKKHWPSHHH  60
LDKYTKDLIR LLRNNNIGIT KLYTILGDFL GSMQNVPATK ICLKLFCQKI NREQAEDDIK  120
KTLALVRELC KSDPGFMFSV DTDDDGRIKT FMWTNSHSRM QYDHFGDVVS FDTTFQTDLY  180
DMPFGLFVGV NNHFQTVLLG GVLMTDEKIE SFRWVFKEFA SMMGGKEPKT ILTDQCRAME  240
VAIAEEWKNT IHQWCKWPVL KRVKECVRTK YTSIKEFRDK FHFMLNEMLT IEEFENSWAT  300
LWKQYGLQDN DFLKQIYETR EKWVKSYFKG VFYAGMTSTQ RSESANHMLK NILSPGRTLH  360
KFIDQYMKLQ YIRDEDENYE ERRNKLNSKR VTTGGPLVVH AHKIYTLKVF ALFCELKEDS  420
ELYRTVELIQ GQQYLVEHYN LDRVQHWCKG RYTIDIVDNG RKYSCECGLF EHFGLPCSHV  480
LRVMISCGAQ QLPECMVVQR WTKKARHVLP EELSQYKKDN LALLAQTYRH SSLLLKALQF  540
IEMGDSNAES HTVAMKVLDD GIESLTEISK QKDGMGLGHT QTKNQYT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG218700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J08534.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1NG218700.1.p