PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG221300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 357aa MW: 39185.2 Da PI: 4.2966

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG221300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.6	1.1e-18	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 lppG+ FhP d+elv ++L + v+g++ ++ v+++ ++ Pw+L ++ a+++e yfF+++++ +++ r+ r + ++W ++ Pavir.1NG221300.1.p 11 LPPGLNFHPDDDELVEFFLLPTVRGEPawFPGVIVVDDDTAANTVPWKLLeRHGLAGDDEAYFFVRTKQDAKEAARQDRyCAGGARWVSQ 100 79***********************775665668888899***7344456888****************55566678876 PP NAM 87 gkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 e ++ + L +g ++ g +t Wvmhey+l Pavir.1NG221300.1.p 101 RPRIEWKR-------INLNLQMGRGkSSGGGGSTGWVMHEYTL 136 55333322.......344455555523445679******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-25	4	141	IPR003441	NAC domain
PROSITE profile	PS51005	21.865	11	152	IPR003441	NAC domain
Pfam	PF02365	2.7E-12	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSTKAAKAIG LPPGLNFHPD DDELVEFFLL PTVRGEPAWF PGVIVVDDDT AANTVPWKLL 60 ERHGLAGDDE AYFFVRTKQD AKEAARQDRY CAGGARWVSQ RPRIEWKRIN LNLQMGRGKS 120 SGGGGSTGWV MHEYTLTEPA CPFIKICHVS FSGHGKGRKR VPDEEYSDCC RTAEPASKRA 180 RVDAAAANSG SSPCVYGSTA PTIVICGYDY EPAQVTDEQI LEWASTLLVD DAEPAPEQHK 240 TDEQLMIQET VAAVAAESSD GISPCNNQQQ QQQLDSALCM EVEERQEIQE DQLQLVQSSA 300 TGSFFPYTES AADSSTDDAK PAREQHLEQG VPTTEQHLPA EYQNGGDDQQ ENLEFW*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSTKAAKAIG LPPGLNFHPD DDELVEFFLL PTVRGEPAWF PGVIVVDDDT AANTVPWKLL  60
ERHGLAGDDE AYFFVRTKQD AKEAARQDRY CAGGARWVSQ RPRIEWKRIN LNLQMGRGKS  120
SGGGGSTGWV MHEYTLTEPA CPFIKICHVS FSGHGKGRKR VPDEEYSDCC RTAEPASKRA  180
RVDAAAANSG SSPCVYGSTA PTIVICGYDY EPAQVTDEQI LEWASTLLVD DAEPAPEQHK  240
TDEQLMIQET VAAVAAESSD GISPCNNQQQ QQQLDSALCM EVEERQEIQE DQLQLVQSSA  300
TGSFFPYTES AADSSTDDAK PAREQHLEQG VPTTEQHLPA EYQNGGDDQQ ENLEFW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG221300.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T7F502	1e-103	A0A2T7F502_9POAL; Uncharacterized protein
STRING	Pavir.Ia01183.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8717	9	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	4e-10	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Pavir.1NG221300.1.p