PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG222100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 542aa    MW: 58790.4 Da    PI: 3.9578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG222100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.11.5e-18111471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                          lppG+ FhP d+el+ ++L + v+g++  ++   vi +    ++ Pw+L  ++  a+++e yfF++++   ++  r+ r  +  ++W ++
  Pavir.1NG222100.1.p  11 LPPGLNFHPDDDELIEFFLLPTVRGEPawFPGVIVIGDDTAANTLPWKLLeRHGLAGDDEAYFFVRTKDGIKEAARQDRyCAGGARWVSQ 100
                          79*************************8866667899999*********7344456888********************6666778*977 PP

                  NAM  87 gkdkevlsk....kgelvglkktLvfykgrapk....gektdWvmheyrl 128
                               vl +    +++  + +  L +  gr ++    g +t Wvmhey+l
  Pavir.1NG222100.1.p 101 RP---VLGAscigGERIEWRRINLNLQMGRGKSsgggGGSTGWVMHEYTL 147
                          55...4444444344555566678888554443112256*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-245160IPR003441NAC domain
PROSITE profilePS5100525.17811163IPR003441NAC domain
PfamPF023652.4E-1112147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSTKAATAIG LPPGLNFHPD DDELIEFFLL PTVRGEPAWF PGVIVIGDDT AANTLPWKLL  60
ERHGLAGDDE AYFFVRTKDG IKEAARQDRY CAGGARWVSQ RPVLGASCIG GERIEWRRIN  120
LNLQMGRGKS SGGGGGSTGW VMHEYTLTEP ACPFLKICHV SFSGHGKGRK RVPDEEYSDC  180
CRTAEPASKR ARVDVAAANS GSSTCVYGST TPMIGDPNVA HASAGQQEHS PSPFPIYQGI  240
SAICGYDYEP AQVTDEQILE WGSSFASLLA DDAVPTAEQH KTDEQLMNQE TVAAVAAESS  300
DGISPSNNQQ QQQLDSALCM EVEERQEIQE DQLQLVQSST TGSFFPYAES AADSSSSGIC  360
GYDYEPEQVT DEQIMEWASS LLADDAEPAP EQHKIDEQLM IQETVAGPAE SPDGISSSNL  420
QLQLDGTYLP ADAMPLMEME ERQEVDDDDQ LQPVQSSTTG SFFPYAESAA DSSSSGICGY  480
DCEPAQVITD EQILEWESAG ADQLYLEQGV PTTEQHLPLP AEYQNGGDDR QENLEFWSHR  540
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG222100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QIZ71e-173A0A3L6QIZ7_PANMI; Uncharacterized protein
STRINGPavir.Aa02230.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-10NAC domain containing protein 57