PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG261300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 227aa    MW: 23366.1 Da    PI: 7.9095
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG261300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20103137135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Pavir.1NG261300.1.p 103 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 137
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-2097149IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.48397133IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-1498137No hitNo description
Gene3DG3DSA:3.30.50.102.5E-17101137IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.29E-13102134No hitNo description
PfamPF003204.9E-18103137IPR000679Zinc finger, GATA-type
PROSITE patternPS003440103128IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLQELAPCAC GGFYAGGCGG RCAGAAASAF SMLFPAGADQ CYYYKEEDDG PPYGGGPVDC  60
TLSLGTPSTR RAEAGAGGHA RAAGGGGAPC KDSSGRGSPA RRCANCDTTS TPLWRNGPRG  120
PKSLCNACGI RYKKEERRAA AAVAPAPEPQ EYACGGYARQ HQHQQPPQPQ WGCYGAAAAK  180
SASFGMYGGD VVDAAADGPC LSWMLNVMPS SPAFAVRERP TLFQYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG261300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806644.11e-102GATA transcription factor 15-like
TrEMBLA0A3L6R9P91e-106A0A3L6R9P9_PANMI; Uncharacterized protein
STRINGPavir.J03293.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.14e-21GATA transcription factor 20