PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG272900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 223aa    MW: 24039.4 Da    PI: 10.6877
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG272900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.6e-153786355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr ++ +g ++AeIrd s++g  +r++lg+f+t+e Aa a+++a+ + +g
  Pavir.1NG272900.1.p 37 FIGVRPRP-WGTFAAEIRD-STRG-GARVWLGTFDTPEAAALAYDQAAFSARG 86
                         57***999.**********.3433.4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.4153694IPR001471AP2/ERF domain
SMARTSM003802.0E-2736100IPR001471AP2/ERF domain
CDDcd000185.68E-123771No hitNo description
PRINTSPR003672.9E-73748IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-193796IPR016177DNA-binding domain
PfamPF008473.9E-103786IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-263795IPR001471AP2/ERF domain
PRINTSPR003672.9E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAVAGMVWSQ NTVDRQLRQP NDDDASPGEK KRRPHAFIGV RPRPWGTFAA EIRDSTRGGA  60
RVWLGTFDTP EAAALAYDQA AFSARGAAAV LNFPVERVRE SLGPLVALAG GAAGGSPVLA  120
LKRRHSMRRH MRRRKKLSRP VVSTTTGKAD LSLSSKHLRQ PPRRHCSDEP CLPGVAMAAA  180
VPEHHAVTMR CGVLELEDLG TDYLDELLRA SCELTAGRSS TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2337961574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121135KRRHSMRRHMRRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG272900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826606.15e-89ethylene-responsive transcription factor ERF094-like
TrEMBLA0A2S3IFS91e-87A0A2S3IFS9_9POAL; Uncharacterized protein
STRINGPavir.J02630.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-29ethylene response factor 1