PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG278900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 513aa    MW: 56571 Da    PI: 4.5741
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG278900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34791712103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k
  Pavir.1NG278900.1.p  79 FLSKTYDLVSEPALDGVISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSK 159
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r++s+
  Pavir.1NG278900.1.p 160 HLLKRIVRRRSS 171
                          ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3374168IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-5575168IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.6E-3775168IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-1679102IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3079168IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-16117129IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340118142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-16130142IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDRPRPRADA GGSNPDAPYS AVAALLLEPK LEDEELPLRQ LASPGPFVPR DQLMPAAPVA  60
AESPRPLEAL LQGSQLPPFL SKTYDLVSEP ALDGVISWGA AGNSFVVWDP STFARDVLPH  120
NFKHNNFSSF VRQLNTYGFR KVHADRWEFA HEDFLRHSKH LLKRIVRRRS SPTQQSSIQP  180
GSSSGESSLD PELHTLRREK NALFEEVARL KQEHCQTIEQ MSTLNHRLES AEDRQKQMVS  240
FLAKLLQNPS FVRQLKLYRE QKEIDSIRVK RKFLKHVPHS SIESGESSSQ HGGESGSQFP  300
VSSPMDTSAH DDIAELQNFL LEDDDLNFGM DPDSIGLDRA EQPDDIGALV QGFDTQEELE  360
LVSGPELLEM PPASGPLGQD PTIGRSKGKS VLCPGLDATS SEASYLGSIS DTMGALSGTM  420
LGTASTMMDA DEEQMWGVDA SAPLQSTCSG SSQQTFSSLA SDPYLMDIAN KPDKFWDLDF  480
QTLDQGDLQL DKCAIDDPTL QQQQQQRNMK DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-247417115123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.194880.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG278900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3L6QHX90.0A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRINGPavir.Aa01928.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-69heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]