PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG284500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 253aa    MW: 27198.1 Da    PI: 6.6845
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG284500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.28.8e-181152343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE.-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif.sst 43
                         i n+s r  t+ kRr+g++KKA+EL +LCd++v+v+++ +++
  Pavir.1NG284500.1.p 11 IANDSTRRATLKKRRKGLMKKASELATLCDVDVLVVVYdGEQ 52
                         89*********************************9984555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.11148IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-19162IPR002100Transcription factor, MADS-box
CDDcd002662.22E-19285No hitNo description
SuperFamilySSF554558.76E-21395IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171152IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MARKKVALQW IANDSTRRAT LKKRRKGLMK KASELATLCD VDVLVVVYDG EQGEARPEVW  60
PDAPGEAERI AARFKAVPEL DQCKKKQDMK GFLTQSNDKL RDQLRKAQHE NQERERDLLL  120
HDAIAGRLPG LVGLSVEEVV TLGLVVEQRI QVVMDAIARL QGEGHDLPAA AAAAAALPQP  180
PLAPFSTGAG HRDMMMPAPH PQGWMVAGGD NGALAYNGLS FVGAGGDMTP QFSDMGFGFE  240
GPGAGQSFPY SM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVALQWIANDSTRRATLKKRR
22125KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG284500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821492.11e-121agamous-like MADS-box protein AGL80
TrEMBLA0A2T7F7C31e-131A0A2T7F7C3_9POAL; Uncharacterized protein
STRINGPavir.Aa01999.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-18AGAMOUS-like 80