PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG284800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 202aa    MW: 21702.6 Da    PI: 8.6368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG284800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.16.1e-2261381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atg 87 
                          lppG+ F P+de  v +yL +++ g  l+++  + + d +++ P++L  + +++++e +fF++ + +  +g+r++r  +  g W+  +t 
  Pavir.1NG284800.1.p   6 LPPGLLFAPEDEVAVEHYLLPRLLGWALPFDGLVLDDDPLSAPPRELL-ERNGRREEAFFFAEGQARCGKGTRQKRtCAGGGWWEgqKTC 94 
                          79****************************88999************7.446677899******************54556667633333 PP

                  NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + + l+    +ge+ + kk L f+   a +  +t Wvmhey++
  Pavir.1NG284800.1.p  95 AEGDKLRVpggGGEAAWRKKALNFHCDGAGNKGSTGWVMHEYAV 138
                          333333225669999**********666666679********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-303156IPR003441NAC domain
PROSITE profilePS5100526.2766157IPR003441NAC domain
PfamPF023652.7E-147137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAAAGLPPGL LFAPEDEVAV EHYLLPRLLG WALPFDGLVL DDDPLSAPPR ELLERNGRRE  60
EAFFFAEGQA RCGKGTRQKR TCAGGGWWEG QKTCAEGDKL RVPGGGGEAA WRKKALNFHC  120
DGAGNKGSTG WVMHEYAVTA PEDLARSPLR LYHIRLSSYG RKQSGAMEVP RHTAKARHTA  180
KFSPSVADGE PPTAVLGTAK V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG284800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438091.19e-96uncharacterized protein LOC8065510
TrEMBLA0A3L6RVY21e-111A0A3L6RVY2_PANMI; Uncharacterized protein
STRINGSi019248m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137