PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG289200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 206aa    MW: 22808.3 Da    PI: 6.294
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG289200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-3371241128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGf+F P+de+lv ++L++k+++ +++  ++i++v + +++Pw+L+ ++ +  ++wyfFs++++        +r+  +gyW+  g d+
  Pavir.1NG289200.1.p   7 LPPGFHFFPSDEDLVIHFLRRKAANLPCRP-DIIPTVLLQHYNPWELNGTALQAGNQWYFFSHAAQ--------SRISPNGYWNPIGADE 87 
                          79*************************999.99**************965566789******9855........68999*********** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s +g +vglkktL+f +g+ +kg kt+W+mhey+l
  Pavir.1NG289200.1.p  88 TVTS-RGCVVGLKKTLIFCTGEPSKGFKTNWIMHEYHL 124
                          ****.999*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-454168IPR003441NAC domain
PROSITE profilePS5100540.6447169IPR003441NAC domain
PfamPF023651.8E-208124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGGATNLPPG FHFFPSDEDL VIHFLRRKAA NLPCRPDIIP TVLLQHYNPW ELNGTALQAG  60
NQWYFFSHAA QSRISPNGYW NPIGADETVT SRGCVVGLKK TLIFCTGEPS KGFKTNWIMH  120
EYHLQQDGGY NVSGSSISSG SSSSRKSQRK RVHSSTESNN WVICRVFESS CGSQVSFHDE  180
GTELSCLDEV FLSLDDYDEV SLPNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-34617416170NO APICAL MERISTEM PROTEIN
1ut4_B3e-34617416170NO APICAL MERISTEM PROTEIN
1ut7_A3e-34617416170NO APICAL MERISTEM PROTEIN
1ut7_B3e-34617416170NO APICAL MERISTEM PROTEIN
3swm_A3e-34617419173NAC domain-containing protein 19
3swm_B3e-34617419173NAC domain-containing protein 19
3swm_C3e-34617419173NAC domain-containing protein 19
3swm_D3e-34617419173NAC domain-containing protein 19
3swp_A3e-34617419173NAC domain-containing protein 19
3swp_B3e-34617419173NAC domain-containing protein 19
3swp_C3e-34617419173NAC domain-containing protein 19
3swp_D3e-34617419173NAC domain-containing protein 19
4dul_A3e-34617416170NAC domain-containing protein 19
4dul_B3e-34617416170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.328220.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG289200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827936.11e-137NAC domain-containing protein 104-like
SwissprotQ8GWK66e-60NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2S3GPW11e-136A0A2S3GPW1_9POAL; Uncharacterized protein
TrEMBLA0A2T7F7M21e-136A0A2T7F7M2_9POAL; Uncharacterized protein
STRINGPavir.Aa01694.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-60xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]