PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG297600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 242aa    MW: 25537 Da    PI: 11.0497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG297600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-21125173355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIr+p+    + +r++lg+f t+e+Aa+a++aa+++l+g
  Pavir.1NG297600.1.p 125 YRGVRRRP-WGKWAAEIRVPK----KaARIWLGTFATPEDAARAYDAAALRLRG 173
                          9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-14124173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-32124182IPR001471AP2/ERF domain
SMARTSM003802.3E-36124187IPR001471AP2/ERF domain
PROSITE profilePS5103224.737124181IPR001471AP2/ERF domain
PRINTSPR003674.0E-11125136IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22125182IPR016177DNA-binding domain
CDDcd000185.62E-15132183No hitNo description
PRINTSPR003674.0E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRPPQSSPAP ASLAEAAEEA VIVAALTHVI AHGRGATLAP HAPSLAVPPY PLTATATGCH  60
RGHAGQAAWR VEPSVHIVSA RDRSACEQGL MASAAQELAP MASACPQEAQ RGAAAAAASA  120
LRRSYRGVRR RPWGKWAAEI RVPKKAARIW LGTFATPEDA ARAYDAAALR LRGSGAKLNF  180
PEDASSLRHP PAPVGSRQPG YGWDRTLERS PWPEMVTRRD NGRFLGPWSI GTSSLSPMPT  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21123186468ATERF1
3gcc_A6e-21123186468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG297600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056112e-46AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149582e-46AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821598.18e-87ethylene-responsive transcription factor ERF110-like
TrEMBLA0A3L6QL763e-91A0A3L6QL76_PANMI; Uncharacterized protein
STRINGPavir.Aa01729.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-21ERF family protein