PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG303700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 372aa    MW: 37525.5 Da    PI: 8.4779
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG303700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-3877138263
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                          keka +cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Pavir.1NG303700.1.p  77 KEKAPNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 138
                          678899****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2671126IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3279135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.65881135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDAAQWHQGL GLGKPMEEML MAGNTNPNQN PNPPPAAPSA APGSQRPSGA PAADAAAPGA  60
GAAGAGAGTE RRARPQKEKA PNCPRCNSTN TKFCYYNNYS LQQPRYFCKT CRRYWTEGGS  120
LRNVPVGGGS RKNKRSSSAV SSAAAAAVST SAAVSGTIPV GLAAKNPKLM HEGAHDLNLA  180
FPHHNGRGLQ PPEFAAFPSL ESSSVCNPGA TMAGNGGAAG RGVGALSAME LLRSTGCYVP  240
LQHVQLGMPA EYAAAGFALG DFRMPPPPQS QSLLGFSLDT HGTGAGGYSA GLQGVQDSAA  300
GRLLFPFEDL KPAVTAAGAA TNNGADQYEH SKDQAGDGSG ASGVTGGHEA HGFWSNSILG  360
NGSSNGGGGP W*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41430.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG303700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546520.0EU954652.1 Zea mays clone 1475494 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826520.10.0dof zinc finger protein 2-like isoform X1
SwissprotB9F1L81e-133DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLA0A2T7FAC10.0A0A2T7FAC1_9POAL; Uncharacterized protein
STRINGPavir.Aa00902.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.16e-36Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]