PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG304200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 389aa    MW: 41887.4 Da    PI: 8.219
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG304200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13.1e-1559140286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+    rs +qCk++++ l+k+yk +k+ + +       ++pyfd+l+
  Pavir.1NG304200.1.p  59 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYskgPRSDIQCKNRIDTLKKKYKVEKAKRAS-------SWPYFDRLD 140
                          *************************************87788833346779***************9999886.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.2E-2457142No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDEDGAASPS PSPSPSRSPS PLPVADPVTV AAAPPGHVAV AIPLCRPSPS SGGGREDAWS  60
DGATSTLIDA WGERFVALGR GSLRHPQWQE VAEVVSSRDG YSKGPRSDIQ CKNRIDTLKK  120
KYKVEKAKRA SSWPYFDRLD ELLAPVYKPN SSSSSAARSA PLPMVPPRIN FPQRTRTPLQ  180
PPAGAKRRMP SPPPQASASS DSSDGFPPEP LSALANGKRR RLEEPTPASA AVNGAESSSS  240
RRVQGLRDLA QAIRRLGEVY QRVESAKREQ ELRMEQERLE AARELEEQRV EFFLKMQMEL  300
SKATGSGSAA PAAIPIPADG NGTRRTGMTA EVATSSNHRV RYRIKGSMHH QAAQQPHYQN  360
NAASGGNGSD SDNKEAEEDA EDEEEESQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG304200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815450.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2S3GQF30.0A0A2S3GQF3_9POAL; Uncharacterized protein
STRINGPavir.Aa01629.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-31sequence-specific DNA binding transcription factors