PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG307700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 717aa    MW: 80913.2 Da    PI: 6.6785
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG307700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.54e-2294180290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la
  Pavir.1NG307700.1.p  94 LYCDYGHRMGFSIRKGKQTYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDHGEWKVIRLVSDHNHNLA 180
                          7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1994180IPR004330FAR1 DNA binding domain
PfamPF105511.6E-25304398IPR018289MULE transposase domain
PROSITE profilePS5096610.027587623IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-5593620IPR007527Zinc finger, SWIM-type
SMARTSM005750.0013598625IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MSQVEPAAAG ADRAGEGAVM PHDEGVGGGG GGDVATTEAQ VAVVVSTSGD ERRVEYGDDA  60
DNEGEEAATV QGSKEGTEEL LRKVLYSEEA AYKLYCDYGH RMGFSIRKGK QTYFTGTKRI  120
RTKDYFCSKE GLKEGEKLTD ANFNDPHTRT NCRAMVRFRV NDHGEWKVIR LVSDHNHNLA  180
RPEERHLLRS ARSLIAGRSS SVDAMVYAGY QVHDGAPQLP AGSTSAANNV ENSKQHLLLG  240
YGTMAKMLAV GTGDLQSLVS YLKGRANEDG MFYWDVQLDQ SGRMTNFFWR DGRSRIDYDC  300
FSDVVVFDST YRLSKQNLIC APFVGVNHHW QTTMYGCALL ADESMSAFVW LFKSFLESMG  360
NRHPQSIFTN LDQVVSKAIE DVFPDTCHRI AHWHIQKNAH SRLGAHNVSK VFNKMFTKCI  420
QGCDSETEFE ETWAQMIHEF KLQDNKWLKK LYKLKKKWCS ALNKCTFDGG VEYEPQCDSM  480
NNIFNSVADK STSLSAIAVA VDKLSEDWRE KELEEDTRCL QKPPACIIKH SDILNHAAKV  540
YTHRIYKLFE TDFLDGCGAT KFKELPCEDN NTHQFEMTMQ GRGSRVCTVR LNMSTMEISC  600
SCSKFETMGL LCSHALKALT IKNICKIPES YILKRWTKDA KKWVFNPKQC ESSYQECMND  660
DAAYCNYVMR YAYDLVTKSQ GQEELRKALW ETLENGEKEL EKYLGNGTQY APSYAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG307700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806331.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3L6RPE70.0A0A3L6RPE7_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGPavir.Aa01718.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5