PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG315400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 353aa    MW: 38463.4 Da    PI: 4.9616
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG315400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3325.51.4e-99123849293
                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STT CS
                 EIN3  49 msraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslse 138
                          m raQDg+L++Mlk+me+cna+GfvYg i+e g+p++g+sdsLr+WWk++v+fd +gp+a++         +ges l     s  h+l++
  Pavir.1NG315400.1.p   1 MLRAQDGVLRHMLKMMEACNARGFVYGVIDEAGEPMSGSSDSLRGWWKDNVSFDGAGPMALTGP-------AGESPLG--IASCLHRLQD 81 
                          78************************************************************98.......4667773..58899***** PP

                          S-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHT CS
                 EIN3 139 lqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirel 227
                          +qD+tlgS+Lsal+qhc+ppqr+fple+g++pPWWPtG+e+wwg++g ++++qg ppy+kphdlkkawk+s+L+av+khmsp+++++r+l
  Pavir.1NG315400.1.p  82 IQDSTLGSVLSALIQHCEPPQRSFPLERGLAPPWWPTGHEAWWGSQGeVQAHQGVPPYRKPHDLKKAWKISLLSAVMKHMSPRFDQMRKL 171
                          ****************************************************************************************** PP

                          TTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX.X CS
                 EIN3 228 erqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedve..gkkeskik 293
                          ++qsk+lq+kmsake+ +++++++qee + ++++++ + +  +  +   ++e +ed++   ++++k +
  Pavir.1NG315400.1.p 172 VWQSKRLQQKMSAKETETWSKIIKQEEVLSRRLKSSLQITPLDGGDDDGEEE-EEDRDgrAHDKRKRE 238
                          *****************************99999996632223333333322.334442233333323 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.1E-1021198No hitNo description
Gene3DG3DSA:1.10.3180.101.4E-6373207IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.57E-5576200IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLRAQDGVLR HMLKMMEACN ARGFVYGVID EAGEPMSGSS DSLRGWWKDN VSFDGAGPMA  60
LTGPAGESPL GIASCLHRLQ DIQDSTLGSV LSALIQHCEP PQRSFPLERG LAPPWWPTGH  120
EAWWGSQGEV QAHQGVPPYR KPHDLKKAWK ISLLSAVMKH MSPRFDQMRK LVWQSKRLQQ  180
KMSAKETETW SKIIKQEEVL SRRLKSSLQI TPLDGGDDDG EEEEEDRDGR AHDKRKRELI  240
STRHNSSGST SSSGVSSGEL AFVLPPELAD LLAEDESLGS PIDELAKLYC YSHHAPADQG  300
GGGHLENCAV AMVPPGELED LIGGVDAVPP DVLFDLIGSC SGLDDVVRLM GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-50742041130Protein ETHYLENE INSENSITIVE 3
4zds_B3e-50742041130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG315400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269670.0KJ726967.1 Zea mays clone pUT3668 EIL transcription factor (EIL5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797229.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9FJQ55e-83EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9LX168e-84EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A2S3GQN60.0A0A2S3GQN6_9POAL; Uncharacterized protein
STRINGPavir.Aa01600.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.14e-85EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]