PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG327300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 284aa    MW: 30453.2 Da    PI: 7.3329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG327300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.6e-184191256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++aa+++++g+
  Pavir.1NG327300.1.p 41 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDAAARAMRGN 91
                         69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-184098No hitNo description
PfamPF008474.7E-114190IPR001471AP2/ERF domain
SMARTSM003809.4E-3441104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-304198IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-214198IPR016177DNA-binding domain
PROSITE profilePS5103222.9194198IPR001471AP2/ERF domain
PRINTSPR003672.7E-94253IPR001471AP2/ERF domain
PRINTSPR003672.7E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEDAGHVHHY AHAHHLHRSK RPPAAIMDED ADGDALPKGA RYRGVRRRPW GRFAAEIRDP  60
MSKERRWLGT FDTAEQAACA YDAAARAMRG NKARTNFPGH VAAGYWPWAA PPPATRNPFL  120
LHNLIMSSSP HHGLRLLHHA GHCHVVSPAP SRPPAPDAAT MPAPSPVAPP PAALDDEDAG  180
DWGDLMRGEP ADAGLLQDAL HGFYPAGTRP RAGASGNLLA AGGGGRAAVP IKQERHDAFI  240
DVDEEDEYPM MPQGLLGDVI QYPAFVEAFV AAPSAPTRRG RRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2038104269ATERF1
3gcc_A9e-2038104269ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG327300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548775e-97EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801749.11e-131ethylene-responsive transcription factor 3-like
TrEMBLA0A3L6RUV01e-153A0A3L6RUV0_PANMI; Ethylene-responsive transcription factor ESR2-like
STRINGPavir.Aa01483.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-11DORNROSCHEN-like