PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG369300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 240aa    MW: 25407.6 Da    PI: 6.6809
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG369300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-0933572348
                         -HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                         +W+ Ia+ ++ gRt++++k++w+++l
  Pavir.1NG369300.2.p 33 RWSMIAAQLP-GRTDNEIKNYWNTHL 57
                         7*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.5E-62857IPR001005SANT/Myb domain
PROSITE profilePS500906.7482857IPR017877Myb-like domain
SuperFamilySSF466892.26E-83164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-133358IPR009057Homeodomain-like
CDDcd001671.27E-63357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MCSSVLRSSY LLVMVNGKWS LIGLSGDGSA NLRWSMIAAQ LPGRTDNEIK NYWNTHLKKQ  60
LRRMGLAEPP PGPAAGCPAA RHMAQWETAR LEAEARLSLL ASSSSGAMSA TAATTTTSAS  120
SSSTYAAGAE KAASEPADIF LRLWSSDIGD SFRRRKTAAP PALVKRKDAA VIKQEAPALP  180
GPGDDSSAAS NEKEALEVYQ MLLDFAGEEL GLFHGRHGGF SLFPPHDDVL TEASLDTAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG369300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9494093e-98EU949409.1 Zea mays clone 406724 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791223.15e-94transcription factor MYB41-like
TrEMBLA0A3L6QIY21e-94A0A3L6QIY2_PANMI; MYB transcription factor
STRINGPavir.Aa01232.1.p1e-145(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-15myb domain protein 17