PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG372500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 391aa    MW: 40811.2 Da    PI: 8.5021
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG372500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.1e-19302336135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Pavir.1NG372500.1.p 302 CSHCGVQKTPQWRAGPAGAKTLCNACGVRYKSGRL 336
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-16296350IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-14298359No hitNo description
Gene3DG3DSA:3.30.50.102.9E-15300334IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.648300332IPR000679Zinc finger, GATA-type
CDDcd002023.63E-15301358No hitNo description
PROSITE patternPS003440302327IPR000679Zinc finger, GATA-type
PfamPF003206.8E-17302336IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MASFVAHHHG SLGEREGRMA ALRSSLRPCE AAEEVDAAPA AWGPAERGAG LFGDGFSVED  60
LLDLEDLCEV DKDCTELVAA APAPAAVEDD KLSSDSHGSS VVSYELMPLP TPVIDLPLPA  120
HDAEELEWVS RIMDDSQAEL PPPPKLQAAA VAAAAARRPL ERAVPTAAAD PMRSPTICAL  180
STEALVPVKA RRSKRSRASV WSLSGGAPLS DSASSSSTAT TSSCCSSASF SPFLFLPADS  240
PPAFWAAHLL GEAPRGASKK SKHGKSGGGG KPKRRGRKPK HHPASHQFRA ASPAAGPGDR  300
RCSHCGVQKT PQWRAGPAGA KTLCNACGVR YKSGRLLPEY RPACSPTFES SIHSNSHRKV  360
LEMRRKKEGV VLFPPGPAPL PAAAPAVASF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.34550.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG372500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798828.10.0GATA transcription factor 6-like
TrEMBLA0A2T7F9Q40.0A0A2T7F9Q4_9POAL; Uncharacterized protein
STRINGPavir.Aa01215.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5