PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG372900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 269aa    MW: 27936.4 Da    PI: 6.2276
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG372900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.1e-07443538
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          C+ +  + ++ fC  ++  lC+ C    H+       H+
  Pavir.1NG372900.1.p  4 QCDVCAAEAASVFCCADEAALCAACDRRVHRAnklagkHR 43
                         7*****************************7677777776 PP
2zf-B_box292.3e-0964105338
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                          ++ C+ ++ek+  lfC++++  lC+dC ++ H        Ht
  Pavir.1NG372900.1.p  64 PPLCDICQEKRGLLFCKEDRAILCRDCDVSVHMAselamrHT 105
                          689***************************994445666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.926147IPR000315B-box-type zinc finger
SMARTSM003363.2E-10147IPR000315B-box-type zinc finger
CDDcd000213.47E-7347No hitNo description
PfamPF006431.4E-5444IPR000315B-box-type zinc finger
SMARTSM003362.1E-1362109IPR000315B-box-type zinc finger
PROSITE profilePS5011910.13962109IPR000315B-box-type zinc finger
PfamPF006431.3E-763105IPR000315B-box-type zinc finger
CDDcd000211.34E-866109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCAACDR RVHRANKLAG KHRRFSLLGP APPSSSPGQQ  60
QQPPPLCDIC QEKRGLLFCK EDRAILCRDC DVSVHMASEL AMRHTRFLLT GVRLSAEPAT  120
CPSPPSDENS SDSLCCSAGG AAPPPAPATS HGSDSSSISE YLTKTLPGWH VEDFLVDEAA  180
AAAAANIAVS ADASYQGGVA RVGGVPDGGY AAWMAQEQLF GDSTAAGGGA RASRERWVPQ  240
MMYGGPEVAV AGSKRSRTAA SPAAYSYW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG372900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687151e-140EU968715.1 Zea mays clone 323650 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792349.11e-134B-box zinc finger protein 20-like
SwissprotQ9LQZ77e-54BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A3L6QKL31e-138A0A3L6QKL3_PANMI; B-box zinc finger protein 20-like
STRINGPavir.Aa01111.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-36salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]