PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG402000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 227aa    MW: 25599.9 Da    PI: 9.9247
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG402000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-11103144351
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                           +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Pavir.1NG402000.1.p 103 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 144
                          79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.96678157IPR001471AP2/ERF domain
SMARTSM003801.3E-4102159IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-8102147IPR016177DNA-binding domain
PfamPF008477.2E-6102145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-6105149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSAFVSGK DSLPIDLPKP IENEKPVEVA HSNVKPFSVH PLPPTKTSDV  60
LTKSSNGSDD SKEEKTQYYP GKEIKRRKRH RRKQYVDQEP CIMRGVYFKN MKWQAAIKVD  120
KKQIHLGTVG TQDEAARLYD RAAFMCGREP NFELSEEEKQ ELRKYTWEDF LAVTRNTITS  180
KKQRKVGLLR RSKADLFMGQ SDGDTEMANG GGSSNSDNGD AETSAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.140070.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG402000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648790.0BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151501.11e-147uncharacterized protein LOC100285135
RefseqXP_021315360.11e-146ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_021315361.11e-146ethylene-responsive transcription factor-like protein At4g13040 isoform X3
TrEMBLA0A2T7F6831e-168A0A2T7F683_9POAL; Uncharacterized protein
STRINGPavir.Aa01947.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.29e-47ERF family protein