PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG419000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 216aa MW: 25293.7 Da PI: 6.7917

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG419000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.7	8.6e-27	93	143	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ +++e +s+y s+pik+AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl Pavir.1NG419000.1.p 93 KQGLTFELVSRYLSMPIKQAARELNVGLTVLKKRCRELGIPRWPHRKVKSL 143 6789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.78	80	164	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-21	96	143	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEELRFYEKG YRYYHGLKLH EDEGYFQFQD FSADYLLGEE THLCAISFPE SSFSQEELGC 60 LSEVDFASFW ALVEEEDARR KSDEGPRSGP GKKQGLTFEL VSRYLSMPIK QAARELNVGL 120 TVLKKRCREL GIPRWPHRKV KSLQTLIDNV QELGRPNAQE DGHQTRSLVE RLQRTKKLIE 180 ERPEVMLDEE TKELRQACFK ETFKRRRLLG HGTYW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	207	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG419000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822796.1	1e-129	protein RKD1
Swissprot	Q9M9U9	2e-37	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2S3GTB4	1e-128	A0A2S3GTB4_9POAL; Uncharacterized protein
STRING	Pavir.Aa00708.1.p	1e-155	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-40	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG419000.1.p