PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG421000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 199aa MW: 22769.4 Da PI: 9.2439

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG421000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.8	3.7e-18	91	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r +s+k+++n t++++vCs++g+++ ++k + r gC a++++ +++d+ w+++++++eHnH+l+ Pavir.1NG421000.1.p 91 DFYNLYSWEIGFGIRYGRSRKNSNNY-RTRQDLVCSCHGQSAAGSRK---------TCRRGCPAMIRLLRTQDHGWYISRFVQEHNHDLS 170 6******************96555.99******99987655.........899***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-14	91	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGEAAQIWLP HPRSDENELR DQELVVNASV IERSPKPNII RRAISGPDAR MAPWEESAVS 60 RALRGAQGRS NKPVFEPVLG ASFNSCEEAK DFYNLYSWEI GFGIRYGRSR KNSNNYRTRQ 120 DLVCSCHGQS AAGSRKTCRR GCPAMIRLLR TQDHGWYISR FVQEHNHDLS ESYAENKQWN 180 FSQPNRCINK GFYKETKE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG421000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822596.1	6e-65	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025822597.1	6e-65	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025822598.1	3e-66	protein FAR1-RELATED SEQUENCE 8-like isoform X2
TrEMBL	A0A2T8I8U6	9e-64	A0A2T8I8U6_9POAL; Uncharacterized protein
STRING	Pavir.J27247.1.p	1e-132	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-14	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Pavir.1NG421000.1.p