PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG421300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 250aa    MW: 26437.5 Da    PI: 6.9364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG421300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1877127155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  Pavir.1NG421300.1.p  77 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 127
                          68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1377127IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2178136IPR016177DNA-binding domain
SMARTSM003806.0E-2878141IPR001471AP2/ERF domain
PROSITE profilePS5103222.08978135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3078137IPR001471AP2/ERF domain
PRINTSPR003673.2E-87990IPR001471AP2/ERF domain
CDDcd000181.03E-2079137No hitNo description
PRINTSPR003673.2E-8101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLRLGPPPDR RRTRAAMDAG AFVGSDYYSS SGTPSPVGGG GGADGDGDGS PSSYMTVSSA  60
PPKRRAGRTK FKETRHPVYK GVRRRNPGRW VCEVREPHGK QRIWLGTFET AEMAARAHDV  120
AALALRGRAA CLNFADSPRL LRVPPMGAGH DEIRRAAAVA AEQFRPAPGQ GNAAAEEVAA  180
APPEASALPN APQNFDDPYC IVDDRLDFGM QGYLDMAQGM LIDPPPMAVS SASGGGDDDD  240
NGEVKLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14761341271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG421300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9685620.0EU968562.1 Zea mays clone 322305 dehydration-responsive element-binding protein 1A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.21e-122dehydration-responsive element-binding protein 1G
SwissprotA2X8991e-97DRE1G_ORYSI; Dehydration-responsive element-binding protein 1G
TrEMBLK3YVG61e-121K3YVG6_SETIT; Uncharacterized protein
STRINGPavir.Aa00912.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-36C-repeat/DRE binding factor 2